Add RAGFlow benchmark (#2387)
### What problem does this PR solve? ### Type of change - [x] New Feature (non-breaking change which adds functionality)
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lidp
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rag/benchmark.py
194
rag/benchmark.py
@ -13,10 +13,10 @@
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#
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import argparse
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import json
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import os
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from collections import defaultdict
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from api.db import FileType, TaskStatus, ParserType, LLMType
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from api.db import LLMType
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from api.db.services.llm_service import LLMBundle
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from api.db.services.knowledgebase_service import KnowledgebaseService
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from api.settings import retrievaler
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@ -24,25 +24,27 @@ from api.utils import get_uuid
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from rag.nlp import tokenize, search
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from rag.utils.es_conn import ELASTICSEARCH
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from ranx import evaluate
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import pandas as pd
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from tqdm import tqdm
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class benchmark_ndcg10:
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class Benchmark:
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def __init__(self, kb_id):
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e, kb = KnowledgebaseService.get_by_id(kb_id)
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self.similarity_threshold = kb.similarity_threshold
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self.vector_similarity_weight = kb.vector_similarity_weight
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self.embd_mdl = LLMBundle(kb.tenant_id, LLMType.EMBEDDING, llm_name=kb.embd_id, lang=kb.language)
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def _get_benchmarks(self, query, count=16):
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def _get_benchmarks(self, query, dataset_idxnm, count=16):
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req = {"question": query, "size": count, "vector": True, "similarity": self.similarity_threshold}
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sres = retrievaler.search(req, search.index_name("benchmark"), self.embd_mdl)
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sres = retrievaler.search(req, search.index_name(dataset_idxnm), self.embd_mdl)
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return sres
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def _get_retrieval(self, qrels):
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def _get_retrieval(self, qrels, dataset_idxnm):
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run = defaultdict(dict)
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query_list = list(qrels.keys())
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for query in query_list:
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sres = self._get_benchmarks(query)
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sres = self._get_benchmarks(query, dataset_idxnm)
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sim, _, _ = retrievaler.rerank(sres, query, 1 - self.vector_similarity_weight,
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self.vector_similarity_weight)
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for index, id in enumerate(sres.ids):
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@ -61,34 +63,172 @@ class benchmark_ndcg10:
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d["q_%d_vec" % len(v)] = v
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return docs
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def __call__(self, file_path):
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def ms_marco_index(self, file_path, index_name):
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qrels = defaultdict(dict)
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texts = defaultdict(dict)
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docs = []
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with open(file_path) as f:
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for line in f:
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query, text, rel = line.strip('\n').split()
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filelist = os.listdir(file_path)
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for dir in filelist:
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data = pd.read_parquet(os.path.join(file_path, dir))
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for i in tqdm(range(len(data)), colour="green", desc="Indexing:" + dir):
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query = data.iloc[i]['query']
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for rel, text in zip(data.iloc[i]['passages']['is_selected'], data.iloc[i]['passages']['passage_text']):
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d = {
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"id": get_uuid()
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}
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tokenize(d, text)
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tokenize(d, text, "english")
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docs.append(d)
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texts[d["id"]] = text
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qrels[query][d["id"]] = int(rel)
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if len(docs) >= 32:
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ELASTICSEARCH.bulk(docs, search.index_name("benchmark"))
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docs = []
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qrels[query][d["id"]] = float(rel)
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docs = self.embedding(docs)
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ELASTICSEARCH.bulk(docs, search.index_name("benchmark"))
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ELASTICSEARCH.bulk(docs, search.index_name(index_name))
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docs = []
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run = self._get_retrieval(qrels)
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return evaluate(qrels, run, "ndcg@10")
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docs = self.embedding(docs)
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ELASTICSEARCH.bulk(docs, search.index_name(index_name))
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return qrels, texts
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def trivia_qa_index(self, file_path, index_name):
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qrels = defaultdict(dict)
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texts = defaultdict(dict)
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docs = []
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filelist = os.listdir(file_path)
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for dir in filelist:
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data = pd.read_parquet(os.path.join(file_path, dir))
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for i in tqdm(range(len(data)), colour="green", desc="Indexing:" + dir):
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query = data.iloc[i]['question']
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for rel, text in zip(data.iloc[i]["search_results"]['rank'],
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data.iloc[i]["search_results"]['search_context']):
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d = {
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"id": get_uuid()
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}
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tokenize(d, text, "english")
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docs.append(d)
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texts[d["id"]] = text
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qrels[query][d["id"]] = int(rel)
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if len(docs) >= 32:
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docs = self.embedding(docs)
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ELASTICSEARCH.bulk(docs, search.index_name(index_name))
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docs = []
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docs = self.embedding(docs)
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ELASTICSEARCH.bulk(docs, search.index_name(index_name))
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return qrels, texts
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def miracl_index(self, file_path, corpus_path, index_name):
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corpus_total = {}
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for corpus_file in os.listdir(corpus_path):
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tmp_data = pd.read_json(os.path.join(corpus_path, corpus_file), lines=True)
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for index, i in tmp_data.iterrows():
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corpus_total[i['docid']] = i['text']
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topics_total = {}
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for topics_file in os.listdir(os.path.join(file_path, 'topics')):
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if 'test' in topics_file:
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continue
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tmp_data = pd.read_csv(os.path.join(file_path, 'topics', topics_file), sep='\t', names=['qid', 'query'])
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for index, i in tmp_data.iterrows():
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topics_total[i['qid']] = i['query']
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qrels = defaultdict(dict)
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texts = defaultdict(dict)
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docs = []
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for qrels_file in os.listdir(os.path.join(file_path, 'qrels')):
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if 'test' in qrels_file:
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continue
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tmp_data = pd.read_csv(os.path.join(file_path, 'qrels', qrels_file), sep='\t',
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names=['qid', 'Q0', 'docid', 'relevance'])
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for i in tqdm(range(len(tmp_data)), colour="green", desc="Indexing:" + qrels_file):
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query = topics_total[tmp_data.iloc[i]['qid']]
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text = corpus_total[tmp_data.iloc[i]['docid']]
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rel = tmp_data.iloc[i]['relevance']
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d = {
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"id": get_uuid()
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}
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tokenize(d, text, 'english')
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docs.append(d)
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texts[d["id"]] = text
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qrels[query][d["id"]] = int(rel)
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if len(docs) >= 32:
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docs = self.embedding(docs)
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ELASTICSEARCH.bulk(docs, search.index_name(index_name))
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docs = []
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docs = self.embedding(docs)
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ELASTICSEARCH.bulk(docs, search.index_name(index_name))
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return qrels, texts
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def save_results(self, qrels, run, texts, dataset, file_path):
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keep_result = []
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run_keys = list(run.keys())
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for run_i in tqdm(range(len(run_keys)), desc="Calculating ndcg@10 for single query"):
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key = run_keys[run_i]
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keep_result.append({'query': key, 'qrel': qrels[key], 'run': run[key],
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'ndcg@10': evaluate({key: qrels[key]}, {key: run[key]}, "ndcg@10")})
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keep_result = sorted(keep_result, key=lambda kk: kk['ndcg@10'])
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with open(os.path.join(file_path, dataset + 'result.md'), 'w', encoding='utf-8') as f:
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f.write('## Score For Every Query\n')
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for keep_result_i in keep_result:
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f.write('### query: ' + keep_result_i['query'] + ' ndcg@10:' + str(keep_result_i['ndcg@10']) + '\n')
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scores = [[i[0], i[1]] for i in keep_result_i['run'].items()]
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scores = sorted(scores, key=lambda kk: kk[1])
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for score in scores[:10]:
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f.write('- text: ' + str(texts[score[0]]) + '\t qrel: ' + str(score[1]) + '\n')
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print(os.path.join(file_path, dataset + '_result.md'), 'Saved!')
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def __call__(self, dataset, file_path, miracl_corpus=''):
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if dataset == "ms_marco_v1.1":
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qrels, texts = self.ms_marco_index(file_path, "benchmark_ms_marco_v1.1")
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run = self._get_retrieval(qrels, "benchmark_ms_marco_v1.1")
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print(dataset, evaluate(qrels, run, ["ndcg@10", "map@5", "mrr"]))
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self.save_results(qrels, run, texts, dataset, file_path)
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if dataset == "trivia_qa":
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qrels, texts = self.trivia_qa_index(file_path, "benchmark_trivia_qa")
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run = self._get_retrieval(qrels, "benchmark_trivia_qa")
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print(dataset, evaluate(qrels, run, ["ndcg@10", "map@5", "mrr"]))
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self.save_results(qrels, run, texts, dataset, file_path)
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if dataset == "miracl":
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for lang in ['ar', 'bn', 'de', 'en', 'es', 'fa', 'fi', 'fr', 'hi', 'id', 'ja', 'ko', 'ru', 'sw', 'te', 'th',
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'yo', 'zh']:
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if not os.path.isdir(os.path.join(file_path, 'miracl-v1.0-' + lang)):
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print('Directory: ' + os.path.join(file_path, 'miracl-v1.0-' + lang) + ' not found!')
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continue
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if not os.path.isdir(os.path.join(file_path, 'miracl-v1.0-' + lang, 'qrels')):
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print('Directory: ' + os.path.join(file_path, 'miracl-v1.0-' + lang, 'qrels') + 'not found!')
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continue
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if not os.path.isdir(os.path.join(file_path, 'miracl-v1.0-' + lang, 'topics')):
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print('Directory: ' + os.path.join(file_path, 'miracl-v1.0-' + lang, 'topics') + 'not found!')
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continue
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if not os.path.isdir(os.path.join(miracl_corpus, 'miracl-corpus-v1.0-' + lang)):
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print('Directory: ' + os.path.join(miracl_corpus, 'miracl-corpus-v1.0-' + lang) + ' not found!')
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continue
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qrels, texts = self.miracl_index(os.path.join(file_path, 'miracl-v1.0-' + lang),
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os.path.join(miracl_corpus, 'miracl-corpus-v1.0-' + lang),
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"benchmark_miracl_" + lang)
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run = self._get_retrieval(qrels, "benchmark_miracl_" + lang)
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print(dataset, evaluate(qrels, run, ["ndcg@10", "map@5", "mrr"]))
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self.save_results(qrels, run, texts, dataset, file_path)
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if __name__ == '__main__':
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parser = argparse.ArgumentParser()
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parser.add_argument('-f', '--filepath', default='', help="file path", action='store', required=True)
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parser.add_argument('-k', '--kb_id', default='', help="kb_id", action='store', required=True)
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args = parser.parse_args()
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ex = benchmark_ndcg10(args.kb_id)
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print(ex(args.filepath))
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print('*****************RAGFlow Benchmark*****************')
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kb_id = input('Please input kb_id:\n')
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ex = Benchmark(kb_id)
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dataset = input(
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'RAGFlow Benchmark Support:\n\tms_marco_v1.1:<https://huggingface.co/datasets/microsoft/ms_marco>\n\ttrivia_qa:<https://huggingface.co/datasets/mandarjoshi/trivia_qa>\n\tmiracl:<https://huggingface.co/datasets/miracl/miracl>\nPlease input dataset choice:\n')
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if dataset in ['ms_marco_v1.1', 'trivia_qa']:
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if dataset == "ms_marco_v1.1":
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print("Notice: Please provide the ms_marco_v1.1 dataset only. ms_marco_v2.1 is not supported!")
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dataset_path = input('Please input ' + dataset + ' dataset path:\n')
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ex(dataset, dataset_path)
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elif dataset == 'miracl':
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dataset_path = input('Please input ' + dataset + ' dataset path:\n')
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corpus_path = input('Please input ' + dataset + '-corpus dataset path:\n')
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ex(dataset, dataset_path, miracl_corpus=corpus_path)
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else:
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print("Dataset: ", dataset, "not supported!")
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